First, I am sorry I can't find any referances directly..
But some of the intel chip sets do have an inherant problem mostly is has to do with where the PCIe bus is connected. As 1 channel is hooked to Northbridge/directly to CPU and other channels hooked to South bridge. (or did I get North/South mixed?)
Anyway, the up-shot, you will not get 3 x16 slots going the same way. Some have 2 muliplexed on the channel direct, the 3rd will still be hung out on the other. Then there are those that do not multiplex the direct channel and would leave 2nd and 3rd hung out on the other bridge.
AMD boards have them all "going the same way", even the higher end boards with 4 x16 slots.
There is a post here somewhere with one guy getting "micro stutters" driving him nuts. So dragged his triples(nVidias) over to a buddies runing ATI triples and ran them there. They ran perfectly smooth with buddies Phenom II 6x. The board had 4 x16 slots, not the newer PCIe spec' mind you. But they rocked.
He went home and dumped the Intel setup.
Try a search here for micro stutter..
I come from a racing back ground, and it did not matter how much power you had as much as having all cylinders firing evenly.
So have closer look at where yer PCIe bus is going. For dual setups the multiplex setup should be fine, other wise you would need to put them in the other/Southern slots. Same with the doubled up cards, obviously giving you quads.
Tripples are a problem on intel. Not sure what is curently availible.
There may be tweaks, like runng all on the older x16 spec' rather than mixed.